run_metadata: 76589
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76589 | SRR25204255 | SRX20951226 | SRS18227787 | SRP448120 | PRJNA992237 | Danio rerio Raw sequence reads | PRJNA992237 | Whole Genome Sequencing | normal transcriptome of Danio rerio | 500+M 1 | strain:AB|age:96 hpf|collection date:2021 12 20|geo loc name:not applicable|sex:not applicable|tissue:larvae|replicate:replicate = biological replicate 7|BioSampleModel:Model organism or animal | Transcriptome of Zebrafish Larvae | 500+M 1 | 500+M 1 | Normal Transcriptome of Zebrafish Larvae | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP448120 | L1EGH3101378--D500+M_1.R1.raw.fastq.gz L1EGH3101378--D500+M_1.R2.raw.fastq.gz | fastq fastq | 7797624900.0 | 25819950.0 | L1EGH3101378 D500+M 1.R1.raw.fastq.gz | 0:151 1:151 | A:2029965653;C:1871228929;G:1936430185;T:1959940726;N:59407 | 151 | 151 | 2029965653 | 1871228929 | 1936430185 | 1959940726 | 59407 | SRX20951226 | SRS18227787 | SRA1669538 | Northwest A&F University|College of Animal Science and Technology | Northwest A&F University | 2 | 0.9544 | 0.95473 | 0.04181 | 0.04157 | 0.66474 | 0.66622 | 0.48554 | 0.47543 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2023-07-08 | Larval | Larval | Undetermined | Undetermined |