run_metadata: 76587
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76587 | SRR25204253 | SRX20951228 | SRS18227788 | SRP448120 | PRJNA992237 | Danio rerio Raw sequence reads | PRJNA992237 | Whole Genome Sequencing | normal transcriptome of Danio rerio | 500+M 3 | strain:AB|age:96 hpf|collection date:2021 12 20|geo loc name:not applicable|sex:not applicable|tissue:larvae|replicate:replicate = biological replicate 9|BioSampleModel:Model organism or animal | Transcriptome of Zebrafish Larvae | 500+M 3 | 500+M 3 | Normal Transcriptome of Zebrafish Larvae | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP448120 | L1EGH3101380--D500+M_3.R1.raw.fastq.gz L1EGH3101380--D500+M_3.R2.raw.fastq.gz | fastq fastq | 8511170266.0 | 28182683.0 | L1EGH3101380 D500+M 3.R1.raw.fastq.gz | 0:151 1:151 | A:2227697379;C:2032526244;G:2114078273;T:2136804263;N:64107 | 151 | 151 | 2227697379 | 2032526244 | 2114078273 | 2136804263 | 64107 | SRX20951228 | SRS18227788 | SRA1669538 | Northwest A&F University|College of Animal Science and Technology | Northwest A&F University | 2 | 0.95586 | 0.95617 | 0.03987 | 0.03985 | 0.6775 | 0.68103 | 0.49673 | 0.49123 | 151 | 151 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2023-07-08 | Larval | Larval | Undetermined | Undetermined |