run_metadata: 76467
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76467 | SRR24957219 | SRX20715254 | SRS18006803 | SRP444571 | PRJNA984937 | Danio rerio Raw sequence reads | PRJNA984937 | Whole Genome Sequencing | To further elucidate the mechanism of ovulatory dysfunction in the cyp21a2 gene knockout model we first performed a transcriptome analysis on the ovaries. | cyp21a2 1 | strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:4 to 5 mpf|collection date:not collected|geo loc name:China|sex:female|tissue:ovary|replicate:biological replicate 4|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: female | cyp21a2 1 | cyp21a2 1 | 352bp | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP444571 | cyp21a_3_1.fq.gz cyp21a_3_2.fq.gz | fastq fastq | 6995989200.0 | 23319964.0 | cyp21a 3 1.fq.gz | 0:150 1:150 | A:1835165397;C:1669847288;G:1667209860;T:1823520176;N:246479 | 150 | 150 | 1835165397 | 1669847288 | 1667209860 | 1823520176 | 246479 | SRX20715254 | SRS18006803 | SRA1657875 | Chinese Academy of Fishery Sciences|Chinese Academy of Fishery Sciences | Chinese Academy of Fishery Sciences | 2 | 0.95816 | 0.95833 | 0.02281 | 0.02265 | 0.74823 | 0.7487 | 0.47417 | 0.47569 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2023-06-19 | Adult | Adult | Gonad | Reproductive System |