run_metadata: 76455
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
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| 76455 | SRR24950191 | SRX20708354 | SRS18001299 | SRP444408 | PRJNA984676 | RNA Seq analyses of myocardium specific hey2 overexpressing zebrafish hearts and Adv Hey2 infected NRVMs | PRJNA984676 | Other | To elucidate the molecular underpinning of cardiac dilation and myocardial mitochondrial dysfunction caused by hey2 induction we conducted RNA seq analyses in hey2 overexpression zebrafish hearts and control littermate hearts at 1 week or 1 month post 4 HT treatments. To further investigate the impact of Hey2 in mammalian cardiomyocytes and mitochondria we performed comparative analysis of transcriptome profiles on NRVMs infected with adenovirus containing Hey2 Adv Hey2 or vectors Adv Ctrl. | RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep1 | CTL1w1 | strain:not applicable|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:1 month|dev stage:not applicable|collection date:not applicable|geo loc name:not applicable|sex:male and female|tissue:Heart|ID:CTL1w replicate 1|BioSampleModel:Model organism or animal | RNA Seq for control littermate hearts at 1 week post 4 HT treatments rep1 | CTL1w replicate 1 | CTL1w replicate 1 | RNA Seq for control littermate hearts at 1 week post 4 HT treatments replicate 1 | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | BGISEQ | BGISEQ-500 | SRP444408 | CTL1w1_2.fq.gz CTL1w1_1.fq.gz | fastq fastq | 6781172100.0 | 22603907.0 | CTL1w1 1.fq.gz | 0:150 1:150 | A:1804085074;C:1581571692;G:1567430366;T:1828066356;N:18612 | 150 | 150 | 1804085074 | 1581571692 | 1567430366 | 1828066356 | 18612 | SRX20708354 | SRS18001299 | SRA1657339 | East China Normal University|School of Life Sciences | East China Normal University | 2 | 0.93867 | 0.91921 | 0.06237 | 0.06146 | 0.75858 | 0.76246 | 0.53972 | 0.53069 | 150 | 150 | B | B | biological fallback assumption | bgi | bgi | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2023-06-16 | Juvenile | Juvenile | Heart | Cardiovascular System |