run_metadata: 76381
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76381 | SRR24883275 | SRX20646603 | SRS17944842 | SRP442003 | PRJNA982106 | DEHP exposed zebrafish Danio rerio spleen Transcriptome | PRJNA982106 | Other | Investigating alterations in spleen gene expression profiles following DEHP exposure in adult zebrafish | con2 | sample2 | isolate:missing|breed:danio rerio|age:3 month|dev stage:adult|collection date:2022 09 25|geo loc name:Not collected|sex:not applicable|tissue:spleen|sample type:tissue sample|treatment:control|tmp:ck 2|BioSampleModel:Model organism or animal | spleen sample | sample2 | sample2 | health | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP442003 | CK2.R1.fq.gz CK2.R2.fq.gz | fastq fastq | 11443825500.0 | 38146085.0 | CK2.R1.fq.gz | 0:150 1:150 | A:3107712867;C:2604406715;G:2679598652;T:3051975001;N:132265 | 150 | 150 | 3107712867 | 2604406715 | 2679598652 | 3051975001 | 132265 | SRX20646603 | SRS17944842 | SRA1652098 | Northeast Agricultural University|College of Resources and Environment | Northeast Agricultural University | 2 | 0.90432 | 0.92276 | 0.07243 | 0.07326 | 0.7363 | 0.73695 | 0.44003 | 0.42918 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2023-06-09 | Adult | Adult | Spleen | Hematopoietic System |