run_metadata: 76379
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76379 | SRR24883273 | SRX20646605 | SRS17944843 | SRP442003 | PRJNA982106 | DEHP exposed zebrafish Danio rerio spleen Transcriptome | PRJNA982106 | Other | Investigating alterations in spleen gene expression profiles following DEHP exposure in adult zebrafish | exposure1 | sample4 | isolate:missing|breed:danio rerio|age:3 month|dev stage:adult|collection date:2022 09 25|geo loc name:Not collected|sex:not applicable|tissue:spleen|sample type:tissue sample|treatment:DEHP|tmp:DEHP 1|BioSampleModel:Model organism or animal | spleen sample | sample4 | sample4 | exposure | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP442003 | DEHP1.R1.fq.gz DEHP1.R2.fq.gz | fastq fastq | 11344567800.0 | 37815226.0 | DEHP1.R1.fq.gz | 0:150 1:150 | A:3053207608;C:2620172281;G:2687329750;T:2983695188;N:162973 | 150 | 150 | 3053207608 | 2620172281 | 2687329750 | 2983695188 | 162973 | SRX20646605 | SRS17944843 | SRA1652098 | Northeast Agricultural University|College of Resources and Environment | Northeast Agricultural University | 2 | 0.92192 | 0.9203 | 0.09048 | 0.08897 | 0.71553 | 0.7181 | 0.50378 | 0.50663 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2023-06-09 | Adult | Adult | Spleen | Hematopoietic System |