run_metadata: 75608
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75608 | SRR24742192 | SRX20519420 | SRS17829368 | SRP439656 | PRJNA975724 | Key factors in the process of biliary epithelial cells to bipotential progenitor cells dedifferentiation | PRJNA975724 | Other | Uncover the regulatory mechanisms underlying biliary cell dedifferentiation. | The fish were treated with mtz at 5 dpf and then the livers were collected post 24 hours treatment namly regeneration 0 hour. | scRNA seq of zebrafish R0h livers | Livers of lfabp:Dendra2 NTR fish at mtz R0h | strain:ABGO|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:not applicable|age:not applicable|dev stage:mtz R0h|sex:pooled male and female|tissue:liver|birth location:China|collection date:2021 04 29|geo loc name:China: Chongqing|BioSampleModel:Model organism or animal | scRNA seq of zebrafish R0h livers | 20210429 S3 R0 | 20210429 S3 R0 | Using Chromium Single cell three prime GEM v3.1 Reagent kit | RNA-Seq | TRANSCRIPTOMIC SINGLE CELL | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP439656 | R21049148-20210429-S3-R0-1_combined_R1.fastq.gz R21049148-20210429-S3-R0-1_combined_R2.fastq.gz R21049148-20210429-S3-R0-2_combined_R1.fastq.gz R21049148-20210429-S3-R0-2_combined_R2.fastq.gz R21049148-20210429-S3-R0-3_combined_R1.fastq.gz R21049148-20210429-S3-R0-3_combined_R2.fastq.gz R21049148-20210429-S3-R0-4_combined_R1.fastq.gz R21049148-20210429-S3-R0-4_combined_R2.fastq.gz | fastq fastq fastq fastq fastq fastq fastq fastq | 108860887800.0 | 362869626.0 | R21049148 20210429 S3 R0 1 combined R1.fastq.gz | 0:150 1:150 | A:46078842047;C:20145501988;G:19787836142;T:22846772612;N:1935011 | 150 | 150 | 46078842047 | 20145501988 | 19787836142 | 22846772612 | 1935011 | SRX20519420 | SRS17829368 | SRA1643264 | Institute of Developmental Biology and Regenerative Medicine|Southwest University | Institute of Developmental Biology and Regenerative Medicine AccuraMed Company | 2 | 0.0 | 0.92113 | 0.0 | 0.15798 | 1.0 | 0.81215 | 0.58532 | 150 | 150 | T | B | mate1 technical by mapping diff | illumina | novaseq_era | unknown | poly_a | unknown | sc | single_cell_droplet | 10x | China | 2023-05-25 | Zygote | Embryo | Liver | Liver and Biliary System |