run_metadata: 75444
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75444 | SRR24630527 | SRX20411156 | SRS17723880 | SRP438317 | PRJNA973246 | Differentiating zebrafish slow muscle precursor expression profiles | PRJNA973246 | Other | Zebrafish slow muscle precursor stereotypical behaviours were well characterized but their related gene signatures remained unknown. We characterized the trajectory and gene signatures of differentiating slow muscle precursor using single cell RNA sequencing. | Model organism or animal sample from Danio rerio | differentiating adaxial cell | strain:smyhc1:gfp injected|age:18 hpf|dev stage:18 hpf|sex:missing|tissue:embryos|collection date:2021 03 04|BioSampleModel:Model organism or animal | scRNAseq of smyhc1:gfp zebrafish cells | Lib Adaxial cells 10X | Lib Adaxial cells 10X | 10X genomics single cell three prime v3.1 | RNA-Seq | TRANSCRIPTOMIC SINGLE CELL | other | PAIRED | ILLUMINA | NextSeq 500 | SRP438317 | loader:fastq load.py | Lib_Adaxial_cells_10X_13_21_R1_001.fastq.gz Lib_Adaxial_cells_10X_13_21_R2_001.fastq.gz | fastq fastq | 97290535840.0 | 608065849.0 | Lib Adaxial cells 10X 13 21 R1 001.fastq.gz | 0:28 1:132 | A:31239174068;C:19321240292;G:21191429606;T:25387874670;N:150817204 | 28 | 132 | 31239174068 | 19321240292 | 21191429606 | 25387874670 | 150817204 | SRX20411156 | SRS17723880 | SRA1639828 | Institut de Genomique Fonctionnelle de Lyon|ENS de Lyon, CNRS | Institut de Genomique Fonctionnelle de Lyon | 2 | 0.00774 | 0.8686 | 0.00239 | 0.15226 | 0.99082 | 0.81945 | 0.30856 | 0.50916 | 28 | 132 | T | B | sc-like readlen | illumina | nextseq | unknown | other | unknown | sc | single_cell_droplet | 10x | France | 2023-05-18 | Segmentation | Embryo | Embryo Imprecise | All anatomical structures |