run_metadata: 75421
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75421 | SRR24517736 | SRX20302020 | SRS17627876 | SRP437283 | PRJNA971676 | zebrafish kiss genes knockouts deep sequencing | PRJNA971676 | Other | Mammals possess only one Kisspeptin gene but in teleost like zebrafish there are two copies. While knockout of Kiss1 results in infertility in mammals knockout of both kiss1 and kiss2 barely affects zebrafish reproduction. The functions and their functional divergence of zebrafish kiss genes are still not fully elucidated. Deep sequencing results will reveal the different downstream pathways affected by the two kiss genes and will help to understand their functions and functional divergence. | RNA seq of zebrafish:5dpf larvae wt Replicate1 | zebrafish AO149 01T0001 | strain:AB|age:5dpf|dev stage:larvae|sex:not determined|tissue:whole organism|collection date:2020|genotype:WT|geo loc name:China: Suzhou|sample type:whole organism|Replicate:1|BioSampleModel:Model organism or animal | RNA Seq of zebrafish: larvae | RNA Seq for zebrafish WT larvae 1 | RNA Seq for zebrafish WT larvae 1 | RNA Seq zebrafish WT larvae 1 | RNA-Seq | TRANSCRIPTOMIC | size fractionation | PAIRED | ILLUMINA | HiSeq X Five | SRP437283 | Unknown_AO149-01T0001_good_1.fq.gz Unknown_AO149-01T0001_good_2.fq.gz | fastq fastq | 6809997812.0 | 22853255.0 | Unknown AO149 01T0001 good 1.fq.gz | 0:148.99 1:148.99 | A:1813360438;C:1582845212;G:1601287701;T:1812465242;N:39219 | 148 | 148 | 1813360438 | 1582845212 | 1601287701 | 1812465242 | 39219 | SRX20302020 | SRS17627876 | SRA1636880 | Soochow University|Medical College | Soochow University | 2 | 0.94825 | 0.94824 | 0.087 | 0.08724 | 0.64695 | 0.64715 | 0.49206 | 0.493 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | size_fractionation | unknown | bulk | unknown | unknown | Unknown | 2023-05-11 | Larval | Larval | Whole Organism | All anatomical structures |