run_metadata: 75294
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75294 | SRR25598377 | SRX21326027 | SRS18572180 | SRP454447 | PRJNA964500 | Danio rerio telencephalon sequencing | PRJNA964500 | Whole Genome Sequencing | We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio. | the telencephalon of two fish was extracted and dissociated for preparing scRNA seq libraries | 3065R | breed:wildtype|age:8 mpf|dev stage:adult|collection date:2022 01 11|geo loc name:Switzerland|sex:male|tissue:telencephalon|biomaterial provider:Rainer Friedrich|collected by:Lukas Anneser|genotype:wildtype|BioSampleModel:Model organism or animal | scRNA Seq of Danio rerio: adult telencephalon | 3065R | 3065R | Single cell suspension from adult Danio rerio telencephalon. Library prepared with 10X Genomics v3 reagents. | RNA-Seq | TRANSCRIPTOMIC SINGLE CELL | other | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP454447 | 3065F1-1_220118_NB501735_0823_AH3HHLBGXL_GTAACATG-NoIndex_L000_R1_001.fastq.gz 3065F1-1_220118_NB501735_0823_AH3HHLBGXL_GTAACATG-NoIndex_L000_R2_001.fastq.gz | fastq fastq | 35548236948.0 | 423193297.0 | 3065F1 1 220118 NB501735 0823 AH3HHLBGXL GTAACATG NoIndex L000 R1 001.fastq.gz | 0:28 1:56 | A:10224422089;C:7414175917;G:7794098189;T:10109777968;N:5762785 | 28 | 56 | 10224422089 | 7414175917 | 7794098189 | 10109777968 | 5762785 | SRX21326027 | SRS18572180 | SRA1690085 | Friedrich Miescher Institute for Biomedical Research|Neurobiology | Friedrich Miescher Institute for Biomedical Research | 2 | 0.00913 | 0.90845 | 0.00399 | 0.3776 | 0.99024 | 0.75455 | 0.32653 | 0.50632 | 28 | 56 | T | B | sc-like readlen | illumina | novaseq_era | unknown | other | unknown | sc | single_cell_droplet | 10x | Switzerland | 2023-08-10 | Adult | Adult | Brain | Nervous System |