run_metadata: 75290
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75290 | SRR25598373 | SRX21326031 | SRS18572181 | SRP454447 | PRJNA964500 | Danio rerio telencephalon sequencing | PRJNA964500 | Whole Genome Sequencing | We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio. | the telencephalon of two fish was extracted and dissociated for preparing scRNA seq libraries | 3124R | breed:wildtype|age:6 mpf|dev stage:adult|collection date:2022 03 11|geo loc name:Switzerland|sex:male|tissue:telencephalon|biomaterial provider:Rainer Friedrich|collected by:Lukas Anneser|genotype:wildtype|BioSampleModel:Model organism or animal | scRNA Seq of Danio rerio: adult telencephalon | 3124R4 | 3124R4 | Single cell suspension from adult Danio rerio telencephalon. Library prepared with 10X Genomics v3 reagents. | RNA-Seq | TRANSCRIPTOMIC SINGLE CELL | other | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP454447 | 3124F3-5_220322_A01563_0038_AHY3YHDRXY_CCCACCACAA-AAGCGGAGGT_L002_R1_001.fastq.gz 3124F3-5_220322_A01563_0038_AHY3YHDRXY_CCCACCACAA-AAGCGGAGGT_L002_R2_001.fastq.gz | fastq fastq | 11678915220.0 | 139034705.0 | 3124F3 5 220322 A01563 0038 AHY3YHDRXY CCCACCACAA AAGCGGAGGT L002 R1 001.fastq.gz | 0:28 1:56 | A:3362125535;C:2431029106;G:2460479617;T:3424857950;N:423012 | 28 | 56 | 3362125535 | 2431029106 | 2460479617 | 3424857950 | 423012 | SRX21326031 | SRS18572181 | SRA1690085 | Friedrich Miescher Institute for Biomedical Research|Neurobiology | Friedrich Miescher Institute for Biomedical Research | 2 | 0.00813 | 0.89215 | 0.00415 | 0.42908 | 0.99028 | 0.74651 | 0.33376 | 0.49996 | 28 | 56 | T | B | sc-like readlen | illumina | novaseq_era | unknown | other | unknown | sc | single_cell_droplet | 10x | Switzerland | 2023-08-10 | Adult | Adult | Brain | Nervous System |