run_metadata: 75289
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75289 | SRR25598372 | SRX21326032 | SRS18572181 | SRP454447 | PRJNA964500 | Danio rerio telencephalon sequencing | PRJNA964500 | Whole Genome Sequencing | We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio. | the telencephalon of two fish was extracted and dissociated for preparing scRNA seq libraries | 3124R | breed:wildtype|age:6 mpf|dev stage:adult|collection date:2022 03 11|geo loc name:Switzerland|sex:male|tissue:telencephalon|biomaterial provider:Rainer Friedrich|collected by:Lukas Anneser|genotype:wildtype|BioSampleModel:Model organism or animal | scRNA Seq of Danio rerio: adult telencephalon | 3124R5 | 3124R5 | Single cell suspension from adult Danio rerio telencephalon. Library prepared with 10X Genomics v3 reagents. | RNA-Seq | TRANSCRIPTOMIC SINGLE CELL | other | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP454447 | 3124F2-5_220322_A01563_0038_AHY3YHDRXY_AACCACGCAT-TAACCTGAAT_L002_R1_001.fastq.gz 3124F2-5_220322_A01563_0038_AHY3YHDRXY_AACCACGCAT-TAACCTGAAT_L002_R2_001.fastq.gz | fastq fastq | 15103664688.0 | 179805532.0 | 3124F2 5 220322 A01563 0038 AHY3YHDRXY AACCACGCAT TAACCTGAAT L002 R1 001.fastq.gz | 0:28 1:56 | A:4376559806;C:3122875667;G:3166215898;T:4437453369;N:559948 | 28 | 56 | 4376559806 | 3122875667 | 3166215898 | 4437453369 | 559948 | SRX21326032 | SRS18572181 | SRA1690085 | Friedrich Miescher Institute for Biomedical Research|Neurobiology | Friedrich Miescher Institute for Biomedical Research | 2 | 0.00779 | 0.88709 | 0.00398 | 0.43543 | 0.98973 | 0.74736 | 0.35685 | 0.49938 | 28 | 56 | T | B | sc-like readlen | illumina | novaseq_era | unknown | other | unknown | sc | single_cell_droplet | 10x | Switzerland | 2023-08-10 | Adult | Adult | Brain | Nervous System |