run_metadata: 75278
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75278 | SRR25609942 | SRX21337046 | SRS18582317 | SRP454447 | PRJNA964500 | Danio rerio telencephalon sequencing | PRJNA964500 | Whole Genome Sequencing | We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio. | f24 | strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:24|BioSampleModel:Model organism or animal | RNA seq of Danio rerio: adult telencephalon | f24 Dc | f24 Dc | RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5 | RNA-Seq | TRANSCRIPTOMIC | other | SINGLE | ILLUMINA | Illumina HiSeq 2500 | SRP454447 | 2524F33-1_200821_D00404_0490_BCECNHANXX_TCGACGTC-CTCTCTAT_L004_R1_001.fastq.gz 2524F33-2_200821_D00404_0490_BCECNHANXX_TCGACGTC-CTCTCTAT_L005_R1_001.fastq.gz 2524F33-3_200821_D00404_0490_BCECNHANXX_TCGACGTC-CTCTCTAT_L006_R1_001.fastq.gz | fastq fastq fastq | 1326762552.0 | 26014952.0 | 2524F33 1 200821 D00404 0490 BCECNHANXX TCGACGTC CTCTCTAT L004 R1 001.fastq.gz | 0:51 | A:340637915;C:317128153;G:291366840;T:377494272;N:135372 | 51 | 340637915 | 317128153 | 291366840 | 377494272 | 135372 | SRX21337046 | SRS18582317 | SRA1690795 | Friedrich Miescher Institute for Biomedical Research|Neurobiology | Friedrich Miescher Institute for Biomedical Research | 1 | 0.67552 | 0.14592 | 0.78196 | 0.67118 | 51 | B | usable mapping rate | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | Switzerland | 2023-08-11 | Adult | Adult | Brain | Nervous System |