run_metadata: 75241
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75241 | SRR26143471 | SRX21856058 | SRS18582323 | SRP454447 | PRJNA964500 | Danio rerio telencephalon sequencing | PRJNA964500 | Whole Genome Sequencing | We aimed to characterize different regions and cell types in the telencephalon of zebrafish D. rerio. | f35 | strain:Tgvglut1:GFP; vglut2:DsRed|dev stage:adult|collection date:2020 07 28/2020 09 08|geo loc name:Switzerland|sex:NA|tissue:telencephalon|collected by:Chie Satou|genotype:Tgvglut1:GFP;vglut2:DsRed|fish:35|BioSampleModel:Model organism or animal | RNA seq of Danio rerio: adult telencephalon | f35 Dl | f35 Dl | RNA extraction of microdissected tissue; QC with RNA Pico Chip; library prepared with SmartSe2 protocol home made Tn5 | RNA-Seq | TRANSCRIPTOMIC | other | SINGLE | ILLUMINA | Illumina HiSeq 2500 | SRP454447 | 2556F42-1_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TATCCTCT_L004_R1_001.fastq.gz 2556F42-2_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TATCCTCT_L005_R1_001.fastq.gz 2556F42-3_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TATCCTCT_L006_R1_001.fastq.gz 2556F42-4_200908_D00404_0493_ACECY3ANXX_TAGGCATG-TATCCTCT_L007_R1_001.fastq.gz | fastq fastq fastq fastq | 1040429325.0 | 20400575.0 | 2556F42 1 200908 D00404 0493 ACECY3ANXX TAGGCATG TATCCTCT L004 R1 001.fastq.gz | 0:51 | A:259587031;C:255198479;G:241421038;T:284158496;N:64281 | 51 | 259587031 | 255198479 | 241421038 | 284158496 | 64281 | SRX21856058 | SRS18582323 | SRA1717885 | Friedrich Miescher Institute for Biomedical Research|Neurobiology | Friedrich Miescher Institute for Biomedical Research | 1 | 0.72615 | 0.18087 | 0.79403 | 0.6392 | 51 | B | usable mapping rate | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | Switzerland | 2023-09-22 | Adult | Adult | Brain | Nervous System |