run_metadata: 75099

This data as json

rowid	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	study.PMIDs	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	GEOsample.title	GEOsample.dataprocessing	GEOsample.source	GEOsample.treatmentprotocol	GEOsample.extractprotocol	GEOsample.growthprotocol	GEOsample.characteristics	GEOsample.accession	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.r3_length	run.r4_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	tech_variant	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
75099	SRR24295703	SRX20091106	SRS17422802	SRP434294	PRJNA961336	Single cell transcriptome sequence of intestinal regeneration in zebrafish	PRJNA961336	Other	The jejunal regeneration is achieved by ileal enterocytes migration and transdifferentiation. To characterize the change of intestinal cell types and molecule mechanism we describe intestinal regeneration and performed scRNA seq to explore mechanism of migration and transdifferentiation.					20201026 S3 S0hpt S26 L003 R1 001.fastq		strain:not applicable\|dev stage:MTZ 0 hpt\|sex:pooled male and female\|tissue:intestine\|collection date:2020 10 26\|geo loc name:China:Chongqing\|replicate:replicate 9\|BioSampleModel:Model organism or animal									scRNA seq of zebrafish intestine: MTZ 0 hpt	20201026 S3 S0hpt S26 L003 R1 001	20201026 S3 S0hpt S26 L003 R1 001	Single Cell 3 Gene Expression libraries comprise standard Illumina paired end constructs which begin with P5 and end with P7. 16 bp 10x Barcodes are encoded at the start of TruSeq Read 1 while 8 bp sample index sequences are incorporated as the sample index read. TruSeq Read 1 and Read 2 are standard Illumina sequencing primer sites used in paired end sequencing. TruSeq Read 1 is used to sequence 16 bp 10x Barcodes and 30 bp UMI. Sequencing these libraries produce a standard Illumina BCL data output folder.			RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	Oligo-dT	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP434294			20201026_S3_S0hpt_S26_L003_R1_001.fastq.gz 20201026_S3_S0hpt_S26_L003_R2_001.fastq.gz	fastq fastq	9523579187.0	53204353.0	20201026 S3 S0hpt S26 L003 R1 001.fastq.gz	0:28 1:151	A:2683643441;C:2130409626;G:2213828474;T:2495632325;N:65321	28	151			2683643441	2130409626	2213828474	2495632325	65321	SRX20091106	SRS17422802	SRA1626787	Southwest University\|Institute of Developmental Biology and Regenerativ	Southwest University	2	0.00736	0.92902	0.00193	0.10378	0.98815	0.81525	0.45394	0.60873	28	151	T	B	sc-like readlen	illumina	novaseq_era	unknown	poly_a	trueseq	sc	single_cell_droplet	10x		China	2023-04-25	Undetermined	Undetermined	Gut	Digestive System