run_metadata: 74633
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74633 | SRR23884658 | SRX19696514 | SRS17065387 | SRP427793 | PRJNA945580 | Danio rerio strain:AB Raw sequence reads | PRJNA945580 | Other | The Raw sequence reads of WT and miR 184 KO zebrafish eyes | 210508902 | strain:AB|age:2 month|sex:pooled male and female|tissue:eyes|ID:2|BioSampleModel:Model organism or animal | WT 2 | 210508902 | 210508902 | NEBNext Ultra RNA Library Prep Kit for Illumina | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ILLUMINA | Illumina HiSeq 1000 | SRP427793 | WT_2_1.fq.gz WT_2_2.fq.gz | fastq fastq | 6735894000.0 | 22452980.0 | WT 2 1.fq.gz | 0:150 1:150 | A:1829468826;C:1562022082;G:1548721920;T:1795640273;N:40899 | 150 | 150 | 1829468826 | 1562022082 | 1548721920 | 1795640273 | 40899 | SRX19696514 | SRS17065387 | SRA1605997 | Henan university|Joint National Laboratory for Antibody Drug Engine | Henan university | 2 | 0.94008 | 0.9398 | 0.10958 | 0.11001 | 0.69907 | 0.70088 | 0.46448 | 0.46026 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | nebnext | bulk | unknown | unknown | China | 2023-03-17 | Juvenile | Juvenile | Eye | Sensory System |