run_metadata: 74632
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74632 | SRR23884657 | SRX19696515 | SRS17065386 | SRP427793 | PRJNA945580 | Danio rerio strain:AB Raw sequence reads | PRJNA945580 | Other | The Raw sequence reads of WT and miR 184 KO zebrafish eyes | 210508903 | strain:AB|age:3 month|sex:pooled male and female|tissue:eyes|ID:3|BioSampleModel:Model organism or animal | WT 3 | 210508903 | 210508903 | NEBNext Ultra RNA Library Prep Kit for Illumina | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ILLUMINA | Illumina HiSeq 1000 | SRP427793 | WT_3_1.fq.gz WT_3_2.fq.gz | fastq fastq | 6562300200.0 | 21874334.0 | WT 3 1.fq.gz | 0:150 1:150 | A:1770944612;C:1532296482;G:1519920976;T:1739094182;N:43948 | 150 | 150 | 1770944612 | 1532296482 | 1519920976 | 1739094182 | 43948 | SRX19696515 | SRS17065386 | SRA1605997 | Henan university|Joint National Laboratory for Antibody Drug Engine | Henan university | 2 | 0.94155 | 0.94127 | 0.10378 | 0.10336 | 0.69331 | 0.69424 | 0.46924 | 0.47393 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | nebnext | bulk | unknown | unknown | China | 2023-03-17 | Adult | Adult | Eye | Sensory System |