run_metadata: 74596
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74596 | SRR23867228 | SRX19679367 | SRS17048763 | SRP427360 | PRJNA944406 | Protective mechanisms of a microbial oil against hypercholesterolemia: evidence from a zebrafish model | PRJNA944406 | Other | We investigated the alterations in the intestinal transcriptome of zebrafish offered DHA and EPA rich microbial oil in the diet. | CT 3 1 | Treatment:Treatment 1|replicate:biological replicate 3|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Adnan Gora|collection date:2021 09|BioSampleModel:Model organism or animal | RNA Seq of zebrafish | D13 1 | D13 1 | PCR enrichment of adaptor ligated DNA | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP427360 | D13_1.fq.gz D13_2.fq.gz | fastq fastq | 5886724800.0 | 19622416.0 | D13 1.fq.gz | 0:150 1:150 | A:1591250606;C:1352364793;G:1355607710;T:1587209533;N:292158 | 150 | 150 | 1591250606 | 1352364793 | 1355607710 | 1587209533 | 292158 | SRX19679367 | SRS17048763 | SRA1604081 | Nord University|Faculty of Bioscience and Aquaculture | Nord University | 2 | 0.94661 | 0.94747 | 0.07525 | 0.07496 | 0.7516 | 0.75187 | 0.55084 | 0.55292 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Norway | 2023-03-17 | Adult | Adult | Gut | Digestive System |