run_metadata: 74583
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74583 | SRR23974546 | SRX19778998 | SRS17142413 | SRP429402 | PRJNA944264 | Danio rerio Raw sequence reads | PRJNA944264 | Other | 17 dpf larvae exposed to glyphosate and parents exposed to glyphosate | exposed larvae | B3 | isolate:6|age:17 dpf|sex:not applicable|tissue:complete larva|sample type:Pool|treatment:1000|replicate:3|BioSampleModel:Model organism or animal | Gly larvae exposed | 6 | 6 | larvae exposed to glyphosate | RNA-Seq | TRANSCRIPTOMIC | unspecified | SINGLE | ILLUMINA | Illumina HiSeq 1500 | SRP429402 | TE3F.fq.gz | fastq | 3021012750.0 | 20140085.0 | TE3F.fq.gz | 0:150 1:0 | A:802754479;C:697084034;G:736507600;T:784641365;N:25272 | 150 | 0 | 802754479 | 697084034 | 736507600 | 784641365 | 25272 | SRX19778998 | SRS17142413 | SRA1610960 | Centro de Investigacion en Alimentacion y Desarrollo|Ecotoxicology | Centro de Investigacion en Alimentacion y Desarrollo | 1 | 0.9039 | 0.08388 | 0.6997 | 0.49603 | 150 | B | usable mapping rate | illumina | hiseq_era | unknown | unknown | unknown | bulk | unknown | unknown | Mexico | 2023-03-27 | Larval | Larval | Whole Organism | All anatomical structures |