run_metadata: 74445
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74445 | SRR23753445 | SRX19604673 | SRS16985185 | SRP426326 | PRJNA942359 | Liver genome analysis of zebrafish | PRJNA942359 | Other | Metabolic regulation | liver | strain:missing|isolate:missing|breed:missing|dev stage:4 mpf|sex:female|tissue:liver|BioSampleModel:Model organism or animal | MJ20211129310 | AN 2 | AN 2 | fish tissue | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP426326 | L1HGC210038--AN_2.R1.raw.fastq.gz L1HGC210038--AN_2.R2.raw.fastq.gz | fastq fastq | 6979159902.0 | 23109801.0 | L1HGC210038 AN 2.R1.raw.fastq.gz | 0:151 1:151 | A:1893884756;C:1592273005;G:1665242849;T:1827327677;N:431615 | 151 | 151 | 1893884756 | 1592273005 | 1665242849 | 1827327677 | 431615 | SRX19604673 | SRS16985185 | SRA1601760 | Huazhong Agricultural University|College of Fisheries | Huazhong Agricultural University | 2 | 0.94987 | 0.94968 | 0.01627 | 0.01619 | 0.87343 | 0.87541 | 0.24244 | 0.24209 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2023-03-08 | Adult | Adult | Liver | Liver and Biliary System |