run_metadata: 74394

This data as json

rowid	run.accession	experiment.accession	sample.accession	study.accession	bioproject	study.title	study.alias	study.type	study.abstract	study.attributes	study.PMIDs	sample.description	sample.title	sample.alias	sample.centername	sample.attributes	GEOsample.title	GEOsample.dataprocessing	GEOsample.source	GEOsample.treatmentprotocol	GEOsample.extractprotocol	GEOsample.growthprotocol	GEOsample.characteristics	GEOsample.accession	experiment.title	experiment.alias	experiment.library_name	experiment.design_description	experiment.library_construction_protocol	experiment.attributes	experiment.library_strategy	experiment.library_source	experiment.library_selection	experiment.library_layout	experiment.platform	experiment.instrument_model	experiment.spot_descriptor	experiment.study_ref	run.title	run.attributes	run.filename	run.semantic_name	run.total_bases	run.total_spots	run.alias	run.read_lengths	run.base_counts	run.r1_length	run.r2_length	run.r3_length	run.r4_length	run.Acount	run.Ccount	run.Gcount	run.Tcount	run.Ncount	run.experiment	run.pool_member	submission.accession	submission.srasource	submission.bioprojectsource	seqdetective.n_mates	seqdetective.mapping_rate.mate1	seqdetective.mapping_rate.mate2	seqdetective.nofeature_rate.mate1	seqdetective.nofeature_rate.mate2	seqdetective.sparsity.mate1	seqdetective.sparsity.mate2	seqdetective.pos_strand_rate.mate1	seqdetective.pos_strand_rate.mate2	seqdetective.readlen.mate1	seqdetective.readlen.mate2	seqdetective.judgement.mate1	seqdetective.judgement.mate2	seqdetective.judgement.reason	platform_family	instrument_generation	read_bias	selection_class	prep_kit	sc_or_bulk	tech_class	technology	tech_variant	submission.bioprojectsource.country	earliest_date	devstage_curation	devstage_curation_coarse	tissue_curation	tissue_curation_coarse
74394	SRR23691688	SRX19554102	SRS16938848	SRP425398	PRJNA940501	Zebrahub: Multimodal Zebrafish Developmental Atlas	PRJNA940501	Other	A single embryo single cell RNA seq developmental atlas of Zebrafish.				TDR49	TDR49 2dpf EKW NA none 10x		strain:EKW\|isolate:single embryo\|breed:siblings per timepoint\|cultivar:not applicable\|ecotype:not applicable\|age:2 dpf\|sex:not determined\|tissue:Whole embryo\|replicate:rep3\|BioSampleModel:Model organism or animal									TDR49	TDR49 2dpf EKW NA none 10x	TDR49 2dpf EKW NA none 10x	single embryo dissociation			RNA-Seq	TRANSCRIPTOMIC SINGLE CELL	cDNA	PAIRED	ILLUMINA	Illumina NovaSeq 6000		SRP425398			TDR49_2dpf_EKW_NA_none_10x_S3_L001_I1_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L001_I2_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L001_R1_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L001_R2_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L002_I1_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L002_I2_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L002_R1_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L002_R2_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L003_I1_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L003_I2_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L003_R1_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L003_R2_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L004_I1_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L004_I2_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L004_R1_001.fastq.gz TDR49_2dpf_EKW_NA_none_10x_S3_L004_R2_001.fastq.gz	fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq	118537620432.0	858968264.0	TDR49 2dpf EKW NA none 10x S3 L001 I1 001.fastq.gz	0:10 1:10 2:28 3:90	A:19359775172;C:19118553633;G:22580874113;T:16247869796;N:71046	10	10	28	90	19359775172	19118553633	22580874113	16247869796	71046	SRX19554102	SRS16938848	SRA1598656	Chan Zuckerberg Biohub\|Quantitative Cell Science	Chan Zuckerberg Biohub	1	0.86228		0.22633		0.87436		0.68374		90		B		usable mapping rate	illumina	novaseq_era	unknown	cdna_unspecified	unknown	sc	single_cell_generic	generic-scrnaseq-only		United States	2023-03-03	Hatching	Embryo	Whole Organism	All anatomical structures