run_metadata: 74386
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74386 | SRR23691699 | SRX19554110 | SRS16938856 | SRP425398 | PRJNA940501 | Zebrahub: Multimodal Zebrafish Developmental Atlas | PRJNA940501 | Other | A single embryo single cell RNA seq developmental atlas of Zebrafish. | TDR25 | TDR25 budstage EKW NA none 10x | strain:EKW|isolate:single embryo|breed:siblings per timepoint|cultivar:not applicable|ecotype:not applicable|age:10 hpf|sex:not determined|tissue:Whole embryo|replicate:rep3|BioSampleModel:Model organism or animal | TDR25 | TDR25 budstage EKW NA none 10x | TDR25 budstage EKW NA none 10x | single embryo dissociation | RNA-Seq | TRANSCRIPTOMIC SINGLE CELL | cDNA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP425398 | TDR25_budstage_EKW_NA_none_10x_S3_L001_I1_001.fastq.gz TDR25_budstage_EKW_NA_none_10x_S3_L001_R1_001.fastq.gz TDR25_budstage_EKW_NA_none_10x_S3_L001_R2_001.fastq.gz TDR25_budstage_EKW_NA_none_10x_S3_L002_I1_001.fastq.gz TDR25_budstage_EKW_NA_none_10x_S3_L002_R1_001.fastq.gz TDR25_budstage_EKW_NA_none_10x_S3_L002_R2_001.fastq.gz TDR25_budstage_EKW_NA_none_10x_S3_L003_I1_001.fastq.gz TDR25_budstage_EKW_NA_none_10x_S3_L003_R1_001.fastq.gz TDR25_budstage_EKW_NA_none_10x_S3_L003_R2_001.fastq.gz TDR25_budstage_EKW_NA_none_10x_S3_L004_I1_001.fastq.gz TDR25_budstage_EKW_NA_none_10x_S3_L004_R1_001.fastq.gz TDR25_budstage_EKW_NA_none_10x_S3_L004_R2_001.fastq.gz | fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq fastq | TDR25 budstage EKW NA none 10x S3 L001 I1 001.fastq.gz | SRX19554110 | SRA1598656 | Chan Zuckerberg Biohub|Quantitative Cell Science | Chan Zuckerberg Biohub | illumina | novaseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_generic | generic-scrnaseq-only | United States | 2023-03-02 | Gastrula | Embryo | Whole Organism | All anatomical structures |