run_metadata: 74352
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74352 | SRR23683738 | SRX19546500 | SRS16931905 | SRP425270 | PRJNA940319 | Danio rerio Raw sequence reads | PRJNA940319 | Whole Genome Sequencing | normal RNA seq of Danio rerio | WT 2 | WT3 1 LEG6613 | strain:not determined|isolate:not determined|breed:yes|cultivar:no|ecotype:not determined|age:not determined|dev stage:not determined|sex:not determined|tissue:brain|sample type:RNA seq|replicate:replicate=biological replicate 5|BioSampleModel:Model organism or animal | RNA seq of Danio rerio | S1333 | S1333 | normal RNA seq of Danio rerio | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP425270 | WT3-1-LEG6613_L1_1.fq.gz WT3-1-LEG6613_L1_2.fq.gz | fastq fastq | 5822410800.0 | 19408036.0 | WT3 1 LEG6613 L1 1.fq.gz | 0:150 1:150 | A:1773220549;C:1139612382;G:1197816098;T:1711712045;N:49726 | 150 | 150 | 1773220549 | 1139612382 | 1197816098 | 1711712045 | 49726 | SRX19546500 | SRS16931905 | SRA1598033 | WuYi University|School of Biotechnology and Health Sciences | WuYi University | 2 | 0.92172 | 0.92168 | 0.19562 | 0.19529 | 0.74014 | 0.74261 | 0.57512 | 0.57778 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2023-03-02 | Undetermined | Undetermined | Brain | Nervous System |