run_metadata: 73901
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73901 | SRR23312689 | SRX19255351 | SRS16658064 | SRP420571 | PRJNA929522 | Transcriptomic signaling in zebrafish Danio rerio embryos exposed to environmental concentrations of glyphosate | PRJNA929522 | Other | https://doi.org/10.1080/03601234.2022.2115780 | low concentration | B1 10 | strain:Wilde type|age:96 hpf|sex:not applicable|tissue:complete embryos|sample type:Pool|treatment:10|Replicate:1|BioSampleModel:Model organism or animal | RNA seq of Danio rerio | B1 | B1 | pool of embryos | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina HiSeq 1000 | SRP420571 | 4_R1_001.fastq.gz | fastq | 4647039750.0 | 30980265.0 | 4 R1 001.fastq.gz | 0:150 1:0 | A:1316546226;C:1021465864;G:1033563752;T:1274977481;N:486427 | 150 | 0 | 1316546226 | 1021465864 | 1033563752 | 1274977481 | 486427 | SRX19255351 | SRS16658064 | SRA1583492 | Centro de Investigacion en Alimentacion y Desarrollo|Ecotoxicology | Centro de Investigacion en Alimentacion y Desarrollo | 1 | 0.91104 | 0.14067 | 0.684 | 0.51319 | 150 | B | usable mapping rate | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | Mexico | 2023-02-02 | Larval | Larval | Embryo Imprecise | All anatomical structures |