run_metadata: 73899
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73899 | SRR23312687 | SRX19255353 | SRS16658066 | SRP420571 | PRJNA929522 | Transcriptomic signaling in zebrafish Danio rerio embryos exposed to environmental concentrations of glyphosate | PRJNA929522 | Other | https://doi.org/10.1080/03601234.2022.2115780 | low concentration | B3 10 | strain:Wilde type|age:96 hpf|sex:not applicable|tissue:complete embryos|sample type:Pool|treatment:10|Replicate:3|BioSampleModel:Model organism or animal | RNA seq of Danio rerio | B3 | B3 | pool of embryos | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina HiSeq 1000 | SRP420571 | 6_R1_001.fastq.gz | fastq | 4621299750.0 | 30808665.0 | 6 R1 001.fastq.gz | 0:150 1:0 | A:1283724967;C:1039098740;G:1051690110;T:1246298234;N:487699 | 150 | 0 | 1283724967 | 1039098740 | 1051690110 | 1246298234 | 487699 | SRX19255353 | SRS16658066 | SRA1583492 | Centro de Investigacion en Alimentacion y Desarrollo|Ecotoxicology | Centro de Investigacion en Alimentacion y Desarrollo | 1 | 0.91793 | 0.12114 | 0.67519 | 0.49228 | 150 | B | usable mapping rate | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | Mexico | 2023-02-02 | Larval | Larval | Embryo Imprecise | All anatomical structures |