run_metadata: 72673
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72673 | SRR23060057 | SRX19013377 | SRS16433014 | SRP417129 | PRJNA922890 | Danio rerio Raw sequence reads | PRJNA922890 | Whole Genome Sequencing | normal reference transcriptome of zebrafish | BPA225 1 | strain:not collected|isolate:not collected|breed:not collected|cultivar:not collected|ecotype:not collected|age:not collected|dev stage:not collected|sex:not collected|tissue:Juvenile whole fish|replicate:replicate = biological replicate 7|BioSampleModel:Model organism or animal | RNA seq of Danio rerio | Z906 | Z906 | normal RNA seq of zebrafish | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | Illumina NovaSeq 6000 | SRP417129 | BPA225_1_Clean_Data1.fq.gz BPA225_1_Clean_Data2.fq.gz | fastq fastq | 6015141019.0 | 21413611.0 | BPA225 1 Clean Data1.fq.gz | 0:140.46 1:140.44 | A:1623319583;C:1384519528;G:1394796849;T:1612405771;N:99288 | 140 | 140 | 1623319583 | 1384519528 | 1394796849 | 1612405771 | 99288 | SRX19013377 | SRS16433014 | SRA1573339 | yangzhou university|College of Animal Science and Technology | yangzhou university | 2 | 0.9392 | 0.94002 | 0.10822 | 0.10578 | 0.69146 | 0.69063 | 0.46651 | 0.4618 | 141 | 141 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2023-01-12 | Juvenile | Juvenile | Whole Organism | All anatomical structures |