run_metadata: 72619
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72619 | SRR22891487 | SRX18849292 | SRS16280577 | SRP414808 | PRJNA915212 | Danio rerio strain: 5dpf AB and sf3b4 / Raw sequence reads | PRJNA915212 | Whole Genome Sequencing | A project that using 5dpf AB control and sf3b4 / mutant for RNA sequencing | Model organism or animal sample from Danio rerio | Control1 | strain:AB|dev stage:5dpf|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal | RNA seq of zebrafish embryo | C1 | C1 | RNA seq of 5dpf | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | BGISEQ | BGISEQ-500 | SRP414808 | assembly:GRCz11 | C1.AddRG.Reorder.Sort.bam | bam | 4546744400.0 | 22733722.0 | C1.AddRG.Reorder.Sort.bam | 0:100 1:100 | A:1170343546;C:1097144275;G:1111316933;T:1167939646;N:0 | 100 | 100 | 1170343546 | 1097144275 | 1111316933 | 1167939646 | 0 | SRX18849292 | SRS16280577 | SRA1565404 | Dr. William TSE/ Kyushu University|Faculty of Agriculture | Dr. William TSE/ Kyushu University | 2 | 0.94204 | 0.94786 | 0.05052 | 0.04964 | 0.68227 | 0.68097 | 0.46172 | 0.45485 | 100 | 100 | B | B | biological fallback assumption | bgi | bgi | unknown | random_priming | unknown | bulk | unknown | unknown | Japan | 2022-12-26 | Larval | Larval | Whole Organism | All anatomical structures |