run_metadata: 72511
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72511 | SRR22825765 | SRX18785200 | SRS16219306 | SRP414053 | PRJNA911178 | Zebrafish HCT116 xenograft model Transcriptome | PRJNA911178 | Other | A zebrafish HCT116 xenograft model to predict Anandamide Outcomes on Colorectal Cancer | Control10 | C10 | strain:Tuebingen|age:6 dpf stage:larva|sex:not applicable|tissue:larvae|BioSampleModel:Model organism or animal | Control10 | C10 | C10 | Standard libarary | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP414053 | 75305_ID2247_2-C10_S1_L001_R1_001.fastq.gz 75305_ID2247_2-C10_S1_L001_R2_001.fastq.gz | fastq fastq | 45091749000.0 | 150305830.0 | 75305 ID2247 2 C10 S1 L001 R1 001.fastq.gz | 0:150 1:150 | A:11132580416;C:10762768723;G:11256208654;T:10952392110;N:987799097 | 150 | 150 | 11132580416 | 10762768723 | 11256208654 | 10952392110 | 987799097 | SRX18785200 | SRS16219306 | SRA1562591 | Universita Politecnica delle Marche|Life Sciences | Universita Politecnica delle Marche | 2 | 0.75396 | 0.73702 | 0.14665 | 0.139 | 0.74229 | 0.74446 | 0.55074 | 0.53284 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | Italy | 2022-12-20 | Larval | Larval | Undetermined | Undetermined |