run_metadata: 72467
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72467 | SRR22574256 | SRX18537347 | SRS16001767 | SRP411954 | PRJNA909445 | Danio rerio Raw sequence reads | PRJNA909445 | Other | Whole transcriptome analysis | Model organism or animal sample from zebrafish | zebrafish strains with IBs wild type fish and without xxx runx2b gene editing fish | strain:zebrafish strains with IBs wild type fish and without xxx runx2b gene editing fish|age:60dpf|sex:pooled male and female|tissue:tail|BioSampleModel:Model organism or animal | mut 1 R1.fastq | mut 1 R1.fastq | mut 1 R1.fastq | tail muscule | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP411954 | mut_1_R1.fastq.gz mut_1_R2.fastq.gz | fastq fastq | 22794782400.0 | 75982608.0 | mut 1 R1.fastq.gz | 0:150 1:150 | A:5961354939;C:5333450654;G:5606279874;T:5893060023;N:636910 | 150 | 150 | 5961354939 | 5333450654 | 5606279874 | 5893060023 | 636910 | SRX18537347 | SRS16001767 | SRA1555446 | Fisheries College of Huazhong Agricultural University|Fisheries College of Huazhong Agricultural Univers | Fisheries College of Huazhong Agricultural University | 2 | 0.9557 | 0.95853 | 0.14259 | 0.13878 | 0.81771 | 0.81533 | 0.45125 | 0.3948 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | random_priming | unknown | bulk | unknown | unknown | China | 2022-12-08 | Juvenile | Juvenile | Tail | Multi-system |