run_metadata: 72465
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72465 | SRR22574254 | SRX18537349 | SRS16001767 | SRP411954 | PRJNA909445 | Danio rerio Raw sequence reads | PRJNA909445 | Other | Whole transcriptome analysis | Model organism or animal sample from zebrafish | zebrafish strains with IBs wild type fish and without xxx runx2b gene editing fish | strain:zebrafish strains with IBs wild type fish and without xxx runx2b gene editing fish|age:60dpf|sex:pooled male and female|tissue:tail|BioSampleModel:Model organism or animal | wt 1 R1.fastq | wt 1 R1.fastq | wt 1 R1.fastq | tail muscule | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP411954 | wt_1_R1.fastq.gz wt_1_R2.fastq.gz | fastq fastq | 23358126000.0 | 77860420.0 | wt 1 R1.fastq.gz | 0:150 1:150 | A:6038817592;C:5541964880;G:5789495907;T:5987202665;N:644956 | 150 | 150 | 6038817592 | 5541964880 | 5789495907 | 5987202665 | 644956 | SRX18537349 | SRS16001767 | SRA1555446 | Fisheries College of Huazhong Agricultural University|Fisheries College of Huazhong Agricultural Univers | Fisheries College of Huazhong Agricultural University | 2 | 0.95378 | 0.95798 | 0.14042 | 0.13872 | 0.82065 | 0.81809 | 0.45238 | 0.37872 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | full_length | random_priming | unknown | bulk | unknown | unknown | China | 2022-12-08 | Juvenile | Juvenile | Tail | Multi-system |