run_metadata: 72448
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72448 | SRR22540107 | SRX18504094 | SRS15974724 | SRP411489 | PRJNA908883 | Zebrafish PFHxS exposure RNA seq | PRJNA908883 | Other | RAN seq of zebrafish embryos post 5 days PFHxS exposure | Model organism or animal sample from Danio rerio | Control 3 | strain:AB|dev stage:5dpf|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal | RNA seq of zebrafish embryo | C3/ | C3/ | effect of pfhxs | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | BGISEQ | BGISEQ-500 | SRP411489 | C3.AddRG.Reorder.Sort.bam | bam | 4617709400.0 | 23088547.0 | C3.AddRG.Reorder.Sort.bam | 0:100 1:100 | A:1198527314;C:1106175441;G:1112503633;T:1200503012;N:0 | 100 | 100 | 1198527314 | 1106175441 | 1112503633 | 1200503012 | 0 | SRX18504094 | SRS15974724 | SRA1553988 | Dr. William TSE/ Kyushu University|Faculty of Agriculture | Dr. William TSE/ Kyushu University | 2 | 0.95798 | 0.96137 | 0.05412 | 0.05264 | 0.67223 | 0.67048 | 0.46376 | 0.46409 | 100 | 100 | B | B | biological fallback assumption | bgi | bgi | unknown | random_priming | unknown | bulk | unknown | unknown | Japan | 2022-12-05 | Larval | Larval | Whole Organism | All anatomical structures |