run_metadata: 72384
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72384 | SRR22805230 | SRX18764963 | SRS16199859 | SRP413700 | PRJNA906294 | Danio rerio Raw sequence reads | PRJNA906294 | Other | Investigating BPA substitute BHbisPhenolF for zebrafish cardiac and vascular toxicity | 28 | 28.ythdf2 MO m6A meRIP replicate 2 | strain:AB|isolate:28|dev stage:34hpf|sex:not determined|tissue:whole embryos|BioSampleModel:Model organism or animal | 28.ythdf2 MO m6A meRIP replicate 2 | 28 | 28 | 28 | RIP-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP413700 | ythdf2_MO_m6A_meRIP_replicate_2_R1.fastq.gz ythdf2_MO_m6A_meRIP_replicate_2_R2.fastq.gz | fastq fastq | 7361721649.0 | 26446542.0 | ythdf2 MO m6A meRIP replicate 2 R1.fastq.gz | 0:139.19 1:139.17 | A:1963471349;C:1716978769;G:1713549467;T:1967688429;N:33635 | 139 | 139 | 1963471349 | 1716978769 | 1713549467 | 1967688429 | 33635 | SRX18764963 | SRS16199859 | SRA1560952 | Zhejiang University|Institute of Genetics | Zhejiang University | 2 | 0.95246 | 0.9547 | 0.1386 | 0.13796 | 0.69757 | 0.69593 | 0.44772 | 0.44911 | 138 | 138 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-12-19 | Pharyngula | Embryo | Whole Organism | All anatomical structures |