run_metadata: 72377
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72377 | SRR22805223 | SRX18764970 | SRS16199866 | SRP413700 | PRJNA906294 | Danio rerio Raw sequence reads | PRJNA906294 | Other | Investigating BPA substitute BHbisPhenolF for zebrafish cardiac and vascular toxicity | 34 | 34.Control knockdown for ribosome profiling replicate 2 | strain:AB|isolate:34|dev stage:48hpf|sex:not determined|tissue:whole embryos|BioSampleModel:Model organism or animal | 34.Control knockdown for ribosome profiling replicate 2 | 34 | 34 | 34 | miRNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP413700 | Control_knockdown_for_ribosome_profiling_replicate_2_R1.fastq.gz Control_knockdown_for_ribosome_profiling_replicate_2_R2.fastq.gz | fastq fastq | 15570048000.0 | 51900160.0 | Control knockdown for ribosome profiling replicate 2 R1.fastq.gz | 0:150 1:150 | A:2253659984;C:2507376043;G:8463755127;T:2344938646;N:318200 | 150 | 150 | 2253659984 | 2507376043 | 8463755127 | 2344938646 | 318200 | SRX18764970 | SRS16199866 | SRA1560952 | Zhejiang University|Institute of Genetics | Zhejiang University | 2 | 0.0 | 0.57539 | 0.0 | 0.06254 | 1.0 | 0.86989 | 0.80447 | 150 | 150 | T | B | mate1 technical by mapping diff | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-12-19 | Hatching | Embryo | Whole Organism | All anatomical structures |