run_metadata: 72376
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72376 | SRR22805222 | SRX18764971 | SRS16199867 | SRP413700 | PRJNA906294 | Danio rerio Raw sequence reads | PRJNA906294 | Other | Investigating BPA substitute BHbisPhenolF for zebrafish cardiac and vascular toxicity | 35 | 35.ythdf2 MO for ribosome profiling replicate 1 | strain:AB|isolate:35|dev stage:48hpf|sex:not determined|tissue:whole embryos|BioSampleModel:Model organism or animal | 35.ythdf2 MO for ribosome profiling replicate 1 | 35 | 35 | 35 | miRNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP413700 | ythdf2_MO_for_ribosome_profiling_replicate_1_R1.fastq.gz ythdf2_MO_for_ribosome_profiling_replicate_1_R2.fastq.gz | fastq fastq | 14133373800.0 | 47111246.0 | ythdf2 MO for ribosome profiling replicate 1 R1.fastq.gz | 0:150 1:150 | A:2066299382;C:2279837250;G:7718113208;T:2069058663;N:65297 | 150 | 150 | 2066299382 | 2279837250 | 7718113208 | 2069058663 | 65297 | SRX18764971 | SRS16199867 | SRA1560952 | Zhejiang University|Institute of Genetics | Zhejiang University | 2 | 0.0 | 0.68906 | 0.0 | 0.06024 | 1.0 | 0.81633 | 0.76663 | 150 | 150 | T | B | mate1 technical by mapping diff | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-12-19 | Hatching | Embryo | Whole Organism | All anatomical structures |