run_metadata: 72351
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72351 | SRR22443584 | SRX18412509 | SRS15895526 | SRP410422 | PRJNA906165 | Danio rerio strain:wild type Raw sequence reads | PRJNA906165 | Whole Genome Sequencing | Evaluation of gene expression changes in zebrafish liver following a full life cycle exposure to metformin in order to evaluate the main pathways affected | Female liver MET | Female liver MET | strain:wild type|age:9 mpf|dev stage:adult|sex:female|tissue:Liver|BioSampleModel:Model organism or animal | Liver MET exposed female | female met liver | female met liver | The current study assessed the long term direct effects of environmentally relevant concentrations of MET ng/L to low g/L on parental F0 zebrafish from egg to 9 mpf | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP410422 | D1_1.fq.gz D1_2.fq.gz D3_1.fq.gz D3_2.fq.gz D4_1.fq.gz D4_2.fq.gz | fastq fastq fastq fastq fastq fastq | 20388437100.0 | 67961457.0 | D1 1.fq.gz | 0:150 1:150 | A:5354858295;C:4849401096;G:4857966731;T:5325615610;N:595368 | 150 | 150 | 5354858295 | 4849401096 | 4857966731 | 5325615610 | 595368 | SRX18412509 | SRS15895526 | SRA1548910 | CIIMAR - Interdisciplinary Centre of Marine and Environmental Research|EDEC - Endocrine Disruptors and Emergent Contamina | CIIMAR - Interdisciplinary Centre of Marine and Environmental Research | 2 | 0.96661 | 0.96256 | 0.02628 | 0.02594 | 0.86212 | 0.86358 | 0.21071 | 0.20689 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | Portugal | 2022-11-29 | Adult | Adult | Liver | Liver and Biliary System |