run_metadata: 72243
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72243 | SRR22378285 | SRX18348794 | SRS15837094 | SRP409217 | PRJNA902840 | Effects of microplastics on zebrafish | PRJNA902840 | Other | Effect of mask derived microplastics on zebrafish liver | replicate=biological replicate 4 | d | PP L1 | strain:TU|age:3 mpf|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal | Transcriptome sequencing of zebrafish liver | PP L 1 | PP L 1 | Whole Transcriptome | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP409217 | PP_L_1_2.clean.fq.gz PP_L_1_1.clean.fq.gz | fastq fastq | 6777441600.0 | 22591472.0 | PP L 1 1.clean.fq.gz | 0:150 1:150 | A:1800305520;C:1575234885;G:1609944648;T:1791917239;N:39308 | 150 | 150 | 1800305520 | 1575234885 | 1609944648 | 1791917239 | 39308 | SRX18348794 | SRS15837094 | SRA1545405 | Fujian Agriculture and Forestry University|college of marine sciences | Fujian Agriculture and Forestry University | 2 | 0.95591 | 0.9549 | 0.03272 | 0.03252 | 0.78932 | 0.78975 | 0.22756 | 0.22649 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | full_length | random_priming | unknown | bulk | unknown | unknown | China | 2022-11-22 | Adult | Adult | Liver | Liver and Biliary System |