run_metadata: 72238
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72238 | SRR22378280 | SRX18348799 | SRS15837099 | SRP409217 | PRJNA902840 | Effects of microplastics on zebrafish | PRJNA902840 | Other | Effect of mask derived microplastics on zebrafish liver | replicate=biological replicate 9 | i | PP H3 | strain:TU|age:3 mpf|sex:not collected|tissue:liver|BioSampleModel:Model organism or animal | Transcriptome sequencing of zebrafish liver | PP H 3 | PP H 3 | Whole Transcriptome | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP409217 | PP_H_3_1.clean.fq.gz PP_H_3_2.clean.fq.gz | fastq fastq | 6050496000.0 | 20168320.0 | PP H 3 1.clean.fq.gz | 0:150 1:150 | A:1609820591;C:1404035937;G:1435709208;T:1600895822;N:34442 | 150 | 150 | 1609820591 | 1404035937 | 1435709208 | 1600895822 | 34442 | SRX18348799 | SRS15837099 | SRA1545405 | Fujian Agriculture and Forestry University|college of marine sciences | Fujian Agriculture and Forestry University | 2 | 0.95422 | 0.95352 | 0.03356 | 0.0333 | 0.81438 | 0.81621 | 0.20548 | 0.20832 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | full_length | random_priming | unknown | bulk | unknown | unknown | China | 2022-11-22 | Adult | Adult | Liver | Liver and Biliary System |