run_metadata: 72114
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72114 | SRR22254571 | SRX18231098 | SRS15727168 | SRP407212 | PRJNA900016 | Danio rerio Raw sequence reads | PRJNA900016 | Whole Genome Sequencing | normal RNA seq of Danio rerio | MUT 1 | strain:AB|dev stage:larvae|sex:pooled male and female|tissue:heart|replicate:replicate = biological replicate 1|BioSampleModel:Model organism or animal | RNA Seq of zebrafish | MUT 1 | MUT 1 | nomal RAN Seq of zebrafish | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP407212 | Mut_1_1.fq.gz Mut_1_2.fq.gz | fastq fastq | 6740114700.0 | 22467049.0 | Mut 1 1.fq.gz | 0:150 1:150 | A:1857778531;C:1530493212;G:1525884670;T:1825874071;N:84216 | 150 | 150 | 1857778531 | 1530493212 | 1525884670 | 1825874071 | 84216 | SRX18231098 | SRS15727168 | SRA1538502 | Southwest University|Institute of Developmental Biology and Regenerativ | Southwest University | 2 | 0.92959 | 0.92749 | 0.10647 | 0.10613 | 0.72117 | 0.72163 | 0.48318 | 0.47385 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-11-10 | Larval | Larval | Heart | Cardiovascular System |