run_metadata: 72109
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72109 | SRR22254566 | SRX18231103 | SRS15727173 | SRP407212 | PRJNA900016 | Danio rerio Raw sequence reads | PRJNA900016 | Whole Genome Sequencing | normal RNA seq of Danio rerio | WT 3 | strain:AB|dev stage:larvae|sex:pooled male and female|tissue:heart|replicate:replicate = biological replicate 6|BioSampleModel:Model organism or animal | RNA Seq of zebrafish | WT 3 | WT 3 | nomal RAN Seq of zebrafish | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP407212 | WT_3_1.fq.gz WT_3_2.fq.gz | fastq fastq | 6636113100.0 | 22120377.0 | WT 3 1.fq.gz | 0:150 1:150 | A:1848901965;C:1491873518;G:1481520683;T:1813733291;N:83643 | 150 | 150 | 1848901965 | 1491873518 | 1481520683 | 1813733291 | 83643 | SRX18231103 | SRS15727173 | SRA1538502 | Southwest University|Institute of Developmental Biology and Regenerativ | Southwest University | 2 | 0.93119 | 0.93088 | 0.10475 | 0.10424 | 0.72123 | 0.72111 | 0.46852 | 0.47642 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2022-11-10 | Larval | Larval | Heart | Cardiovascular System |