run_metadata: 72100
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72100 | SRR22207164 | SRX18185144 | SRS15683477 | SRP406513 | PRJNA898663 | zebrafish Raw sequence reads | PRJNA898663 | Other | High throughput sequencing of LOXHD1B gene knockdown and control in zebrafish | C3 | isolate:control 3|age:5 days|sex:not determined|tissue:RNA|BioSampleModel:Model organism or animal | RNA seq of zebrafish RNA: control 3 | GCS3 | GCS3 | Next generation sequencing library preparations were constructed according to the manufacturers protocol. | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP406513 | C3_combined_R1.fastq.gz C3_combined_R2.fastq.gz | fastq fastq | 6332394900.0 | 21107983.0 | C3 combined R1.fastq.gz | 0:150 1:150 | A:1627554436;C:1541108160;G:1544576517;T:1619111254;N:44533 | 150 | 150 | 1627554436 | 1541108160 | 1544576517 | 1619111254 | 44533 | SRX18185144 | SRS15683477 | SRA1535247 | Shandong Provincial Hospital|Department of Clinical Laboratory | Shandong Provincial Hospital | 2 | 0.95993 | 0.95944 | 0.04103 | 0.04133 | 0.68296 | 0.68779 | 0.48812 | 0.47385 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2022-11-06 | Larval | Larval | Undetermined | Undetermined |