run_metadata: 72099
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72099 | SRR22207163 | SRX18185145 | SRS15683478 | SRP406513 | PRJNA898663 | zebrafish Raw sequence reads | PRJNA898663 | Other | High throughput sequencing of LOXHD1B gene knockdown and control in zebrafish | L1 | isolate:Loxhd1b 1|age:5 days|sex:not determined|tissue:RNA|BioSampleModel:Model organism or animal | RNA seq of zebrafish RNA: loxhd1b morpholino 1 | GCS4 | GCS4 | Next generation sequencing library preparations were constructed according to the manufacturers protocol. | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP406513 | L1_combined_R1.fastq.gz L1_combined_R2.fastq.gz | fastq fastq | 7191693900.0 | 23972313.0 | L1 combined R1.fastq.gz | 0:150 1:150 | A:1864938414;C:1733274971;G:1741654024;T:1851774229;N:52262 | 150 | 150 | 1864938414 | 1733274971 | 1741654024 | 1851774229 | 52262 | SRX18185145 | SRS15683478 | SRA1535247 | Shandong Provincial Hospital|Department of Clinical Laboratory | Shandong Provincial Hospital | 2 | 0.95471 | 0.95533 | 0.05078 | 0.05161 | 0.67844 | 0.68191 | 0.47707 | 0.48159 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2022-11-06 | Larval | Larval | Undetermined | Undetermined |