run_metadata: 71937
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71937 | SRR22163296 | SRX18142172 | SRS15643640 | SRP405971 | PRJNA896758 | Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation | PRJNA896758 | Other | In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation | BG4 1 | Treatment:Treatment 3|replicate:biological replicate 4|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal | RNA Seq of zebrafish | S3 4 1 | S3 4 1 | PCR enrichment of adaptor ligated DNA | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP405971 | S3_4_1.fq.gz S3_4_2.fq.gz | fastq fastq | 6473786700.0 | 21579289.0 | S3 4 1.fq.gz | 0:150 1:150 | A:1748612918;C:1491816166;G:1491960552;T:1741338722;N:58342 | 150 | 150 | 1748612918 | 1491816166 | 1491960552 | 1741338722 | 58342 | SRX18142172 | SRS15643640 | SRA1532106 | Nord University|Faculty of Bioscience and Aquaculture | Nord University | 2 | 0.94269 | 0.9404 | 0.07074 | 0.06953 | 0.73789 | 0.73957 | 0.53497 | 0.53084 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Norway | 2022-11-02 | Adult | Adult | Gut | Digestive System |