run_metadata: 71931
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71931 | SRR22163290 | SRX18142178 | SRS15643646 | SRP405971 | PRJNA896758 | Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation | PRJNA896758 | Other | In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation | CT3 1 | Treatment:Treatment 1|replicate:biological replicate 3|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal | RNA Seq of zebrafish | S1 3 1 | S1 3 1 | PCR enrichment of adaptor ligated DNA | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP405971 | S1_3_1.fq.gz S1_3_2.fq.gz | fastq fastq | 6881200500.0 | 22937335.0 | S1 3 1.fq.gz | 0:150 1:150 | A:1873669495;C:1570999744;G:1573967835;T:1862499052;N:64374 | 150 | 150 | 1873669495 | 1570999744 | 1573967835 | 1862499052 | 64374 | SRX18142178 | SRS15643646 | SRA1532106 | Nord University|Faculty of Bioscience and Aquaculture | Nord University | 2 | 0.93463 | 0.93369 | 0.08182 | 0.08073 | 0.73062 | 0.73109 | 0.53022 | 0.53398 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Norway | 2022-11-02 | Adult | Adult | Gut | Digestive System |