run_metadata: 71925
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71925 | SRR22163284 | SRX18142184 | SRS15643652 | SRP405971 | PRJNA896758 | Anti inflammatory potential of alginates in the zebrafish model of intestinal inflammation | PRJNA896758 | Other | In this study we investigated the impact of dietary alginates on the intestinal transcriptomic landscape of the zebrafish model of intestinal inflammation | CT4 1 | Treatment:Treatment 1|replicate:biological replicate 4|read:forward read|strain:Wild type|isolate:not applicable|breed:not applicable|cultivar:not applicable|ecotype:laboratory|age:1 year|dev stage:Adult|sex:male|tissue:Intestine|collected by:Saima Rehman|collection date:2022 03|BioSampleModel:Model organism or animal | RNA Seq of zebrafish | S1 4 1 | S1 4 1 | PCR enrichment of adaptor ligated DNA | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP405971 | S1_4_1.fq.gz S1_4_2.fq.gz | fastq fastq | 6553685700.0 | 21845619.0 | S1 4 1.fq.gz | 0:150 1:150 | A:1784449261;C:1498869080;G:1499429078;T:1770878702;N:59579 | 150 | 150 | 1784449261 | 1498869080 | 1499429078 | 1770878702 | 59579 | SRX18142184 | SRS15643652 | SRA1532106 | Nord University|Faculty of Bioscience and Aquaculture | Nord University | 2 | 0.93877 | 0.93743 | 0.08244 | 0.08155 | 0.739 | 0.74097 | 0.52274 | 0.52625 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Norway | 2022-11-02 | Adult | Adult | Gut | Digestive System |