run_metadata: 71767
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71767 | SRR22044644 | SRX18025765 | SRS15406475 | SRP404552 | PRJNA893346 | Danio rerio Genome sequencing and assembly | PRJNA893346 | Other | Toxicity of naphthenic acid and benzo[a]pyrene to zebrafish at environmental concentrations | Zebrafish | breed:wild type|age:3 month 4 month|dev stage:Adult fish|sex:male|tissue:liverbrain|BioSampleModel:Model organism or animal | RNA seq of zebrafish | LNABP3 | LNABP3 | Transcriptome of Danio rerio | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP404552 | LNABP3_1.fq.gz LNABP3_2.fq.gz | fastq fastq | 7227946200.0 | 24093154.0 | LNABP3 1.fq.gz | 0:150 1:150 | A:1939462184;C:1664015969;G:1684259233;T:1940131564;N:77250 | 150 | 150 | 1939462184 | 1664015969 | 1684259233 | 1940131564 | 77250 | SRX18025765 | SRS15406475 | SRA1527576 | Shandong Normal University|Shandong Normal University | Shandong Normal University | 2 | 0.93363 | 0.93253 | 0.06747 | 0.06714 | 0.63674 | 0.63865 | 0.50269 | 0.50196 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-10-26 | Adult | Adult | Multi-tissue | Multi-system |