run_metadata: 71669
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71669 | SRR21913251 | SRX17899171 | SRS15415909 | SRP402767 | PRJNA890871 | Setdb1 ChIP seq | PRJNA890871 | Other | Setdb1 ChIP seq 1 | strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|sex:pooled male and female|tissue:hematopoietic stem cell|id</u><u>:1</u><u>|BioSampleModel:Model organism or animal | Setdb1 ChIP seq | Setdb1 ChIP seq 1 | Setdb1 ChIP seq 1 | Setdb1 ChIP seq of replicate 1 | ChIP-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP402767 | Setdb1 ChIP seq_1_R1.fastq.gz Setdb1 ChIP seq_1_R2.fastq.gz | fastq fastq | 9908302200.0 | 33027674.0 | Setdb1 ChIP seq 1 R1.fastq.gz | 0:150 1:150 | A:2799788817;C:2060083633;G:2416457009;T:2631940230;N:32511 | 150 | 150 | 2799788817 | 2060083633 | 2416457009 | 2631940230 | 32511 | SRX17899171 | SRS15415909 | SRA1520950 | East China Normal University|School of Life Sciences | East China Normal University | 2 | 0.7718 | 0.77187 | 0.66177 | 0.66128 | 0.72088 | 0.71963 | 0.49562 | 0.49458 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-10-15 | Larval | Larval | Blood | Hematopoietic System |