run_metadata: 71668
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71668 | SRR21913250 | SRX17899172 | SRS15415910 | SRP402767 | PRJNA890871 | Setdb1 ChIP seq | PRJNA890871 | Other | Setdb1 ChIP seq 2 | strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|sex:pooled male and female|tissue:hematopoietic stem cell|id</u><u>:2</u><u>|BioSampleModel:Model organism or animal | Setdb1 ChIP seq | Setdb1 ChIP seq 2 | Setdb1 ChIP seq 2 | Setdb1 ChIP seq of replicate 2 | ChIP-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP402767 | Setdb1 ChIP seq_2_R1.fastq.gz Setdb1 ChIP seq_2_R2.fastq.gz | fastq fastq | 12909692700.0 | 43032309.0 | Setdb1 ChIP seq 2 R1.fastq.gz | 0:150 1:150 | A:3496408461;C:2593261434;G:3585073580;T:3234906241;N:42984 | 150 | 150 | 3496408461 | 2593261434 | 3585073580 | 3234906241 | 42984 | SRX17899172 | SRS15415910 | SRA1520950 | East China Normal University|School of Life Sciences | East China Normal University | 2 | 0.80561 | 0.80471 | 0.69212 | 0.69176 | 0.71924 | 0.71999 | 0.49445 | 0.4953 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-10-15 | Larval | Larval | Blood | Hematopoietic System |