run_metadata: 71667
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71667 | SRR21912676 | SRX17898596 | SRS15415407 | SRP402754 | PRJNA890767 | Input of Setdb1 ChIP seq | PRJNA890767 | Other | Input of Setdb1 ChIP seq 1 | strain:missing|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|age:missing|dev stage:96hpf|sex:pooled male and female|tissue:hematopoietic stem cell|id</u><u>:1</u><u>|BioSampleModel:Model organism or animal | Input of Setdb1 ChIP seq | Input of Setdb1 ChIP seq 1 | Input of Setdb1 ChIP seq 1 | Input of Setdb1 ChIP seq of replicate 1 | ChIP-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP402754 | Input of Setdb1 ChIP seq_1_R1.fastq.gz Input of Setdb1 ChIP seq_1_R2.fastq.gz | fastq fastq | 12920086500.0 | 43066955.0 | Input of Setdb1 ChIP seq 1 R1.fastq.gz | 0:150 1:150 | A:3743886319;C:2621020407;G:3091990806;T:3463122519;N:66449 | 150 | 150 | 3743886319 | 2621020407 | 3091990806 | 3463122519 | 66449 | SRX17898596 | SRS15415407 | SRA1520925 | East China Normal University|School of Life Sciences | East China Normal University | 2 | 0.84709 | 0.84605 | 0.73727 | 0.73696 | 0.71622 | 0.71825 | 0.49278 | 0.49029 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-10-15 | Larval | Larval | Blood | Hematopoietic System |