run_metadata: 71655
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71655 | SRR21869774 | SRX17856926 | SRS15377984 | SRP402080 | PRJNA889683 | miRNA mRNA sequencing of zebrafish embryos | PRJNA889683 | Other | miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE | TBBPA L 1 | replicate:biological replicate 1|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 4|BioSampleModel:Model organism or animal | miRNA Seq of zebrafish larvae | AT20221113 | AT20221113 | miRNA Seq of zebrafish larvae | miRNA-Seq | TRANSCRIPTOMIC | size fractionation | SINGLE | BGISEQ | BGISEQ-500 | SRP402080 | loader:fastq load.py | TBBPA_L_1.fq.gz | fastq | 527804519.0 | 23370082.0 | TBBPA L 1.fq.gz | 0:22.58 | A:114266025;C:102477479;G:134403120;T:176657729;N:166 | 22 | 114266025 | 102477479 | 134403120 | 176657729 | 166 | SRX17856926 | SRS15377984 | SRA1518395 | Jiangsu University|School of Environment and Safety Engineering | Jiangsu University | 1 | 0.89339 | 0.09635 | 0.92608 | 0.48415 | 22 | B | usable mapping rate | bgi | bgi | unknown | size_fractionation | unknown | bulk | unknown | unknown | China | 2022-10-12 | Larval | Larval | Trunk | Surface Structure |