run_metadata: 71639
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71639 | SRR21869758 | SRX17856942 | SRS15377987 | SRP402080 | PRJNA889683 | miRNA mRNA sequencing of zebrafish embryos | PRJNA889683 | Other | miRNA Seq and RNA Seq data of zebrafish embryos post exposure to TBBPA and TBBPA BHEE | TBBPA H 1 | replicate:biological replicate 1|strain:AB|isolate:not applicable|breed:wild type|cultivar:not applicable|ecotype:not applicable|age:120 hpf|dev stage:larvae|sex:not applicable|tissue:whole body 7|BioSampleModel:Model organism or animal | RNA Seq of zebrafish larvae | AT20221016 | AT20221016 | RNA Seq of zebrafish larvae | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | BGISEQ | BGISEQ-500 | SRP402080 | TBBPA_H_1_1.fq.gz TBBPA_H_1_2.fq.gz | fastq fastq | 6725010600.0 | 44833404.0 | TBBPA H 1 1.fq.gz | 0:150 1:150 | A:1843421900;C:1516907852;G:1500976839;T:1863525958;N:178051 | 150 | 150 | 1843421900 | 1516907852 | 1500976839 | 1863525958 | 178051 | SRX17856942 | SRS15377987 | SRA1518395 | Jiangsu University|School of Environment and Safety Engineering | Jiangsu University | 1 | 0.93897 | 0.11644 | 0.67919 | 0.47402 | 150 | B | usable mapping rate | bgi | bgi | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2022-10-12 | Larval | Larval | Trunk | Surface Structure |